🧬 A snakemake pipline-- quantify hERV, transgenes and genomics from well-based single-cell RNAseq
Well based scRNAseq has many more details than 10x scRNAseq to pay attention to in order to quantify features using Starsolo. Here, we discuss and present the snakemake pipline to quantify hERV, transgenes and genomics from well-based single-cell RNAseq data
May 27, 2025
