🧬 Dissect sctransform()
sctransfrom is highly recommened in spatial genomic analysis, and was first introduced to analyze scRNAseq. Here, we deciper it and reveal what it is really doing mathmatically to have a sense of its applicability.
May 27, 2025
🧬 A snakemake pipline-- quantify hERV, transgenes and genomics from well-based single-cell RNAseq
Well based scRNAseq has many more details than 10x scRNAseq to pay attention to in order to quantify features using Starsolo. Here, we discuss and present the snakemake pipline to quantify hERV, transgenes and genomics from well-based single-cell RNAseq data
May 27, 2025
🧬 EM algorithm, EM with max a posterior, full Bayesian inferences (variational Bayesian) used in auto-coder
EM algorithm, EM with max a posterior, full Bayesian inferences (variational Bayesian) which might be used in auto-coder
Apr 12, 2025
🧬 Smooth tests of goodness of Fit used in Stijn Hawinkel ’s plos one paper
Smooth tests of goodness of Fit used in Stijn Hawinkel ’s plos one paper
Apr 10, 2025
🧬 how good is negative binomial, why AI works for biology
how good is negative binomial
Apr 9, 2025
🧬 Seurat to analysis large sample size of bulk RNAseq. Discuss Wixcox is better for clinical samples
Seurat to analysis large sample size of bulk RNAseq. Discuss Wixcox is better for clinical samples
Apr 8, 2025
🧬 Spatial genomics presentation
What we can get from Spatial genomics is most meaningful? how to present?
Apr 7, 2025
🧬 Deep Neural Network to integrate scRNAseq and spatial genomics
What we can get from Spatial genomics is most meaningful? how to present?
Apr 7, 2025
🧬 Bayesian abundance statistics in PRCC
One sample abundance statistics, bayesian vs frequentist
Apr 6, 2025
🧬 Train a high-performance Yolov8 (CNN) model for histological analysis: data augmentation and combating overfitting by Active Learning
Yolov8, a deep learning tool to
Apr 5, 2025