What we can get from Spatial genomics is most meaningful? how to present?
One sample abundance statistics, bayesian vs frequentist
Yolov8, a deep learning tool to
what is CCA really doing? here we dicepher it and present the mathmatical intuition to appreicate its applicability. Also, discuss the integration.
I did not find any guidline to evaluate the Clinical relevance of mouse data. Here, I present my method used in the nature communications paper
What could be expressive and concise presentation of cell-cell interaction? Here I write an small tool to draw Expressive cord diagram
Sparse low number of cells belonging to cancer cell clusters exist in non-treated sample. Are they noise or artifact due to inperfection of integration algorithm or are they true stem like cells prediposted to be prone to tumorogenesis?
Xenograft tumor is mixture of host cells and xenograft cells. Here I present the methode to simultaneously quantify the gene expression in both xenograft and the host cells.
The RNAseq dataset involves siRNA treatment, lentivirus infection and shRNA treatment. Here I present a way to formulate the generalized linear models to counteract treatment-specific background during differential expressed gene analysis
